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  • What is ESMFold2

    Definition, release context, and model scope

  • GitHub guide

    Repository, examples, Colab, and license notes

  • Biohub

    Official model, API, GitHub, and Atlas sources

  • ESM Atlas

    How ESMFold2 relates to the Biohub atlas

  • API

    Generate and understand Biohub API code

  • Benchmark

    First-party H100 runtime, VRAM, and max length

  • Run ESMFold2 online

    Validate a sequence and fold a protein on hosted GPUs

  • Code Generator

    Create starter Python code for ESMFold2

  • Example result

    Inspect a precomputed ESMFold2 structure in your browser

  • ESMFold2 vs AlphaFold3

    Compare scope, claims, and practical workflow

  • ESMFold2 vs ESMFold

    Clarify old ESMFold and new ESMFold2 search intent

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ESMFold2 Tools logoESMFold2 Tools logoESMFold2 Tools

A third-party ESMFold2 guide, code generator, input builder, and structure inspection toolkit.

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  • What is ESMFold2
  • GitHub
  • Biohub
  • ESM Atlas
  • API
Tools
  • Run ESMFold2 online
  • Code Generator
  • Example result
  • Feature wishlist
Compare
  • vs AlphaFold3
  • vs ESMFold
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© 2026 ESMFold2 Tools. All Rights Reserved.
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Hosted tool

Run ESMFold2 online

Validate a protein sequence in your browser, see what an ESMFold2 result looks like with the interactive example below, and fold your own single-chain protein up to 700 amino acids on our hosted GPUs.

Fold your protein

Paste a sequence or FASTA to validate it instantly. Running the fold is hosted on our GPUs.

16–700 standard amino acids, single chain.

Hosted runs use usage-based credits and include biosafety screening. Do not submit pathogen, toxin, regulated, confidential, or unauthorized third-party sequences.

Interactive demo structure

Precomputed Ubiquitin MSA output from the Biohub ESMFold2 tutorial.

Loading demo structure...
76 residues601 atom rowspTM 0.814

Live example: Ubiquitin (76 residues, pTM 0.814) folded with ESMFold2. Open the full example result.

How it works

Paste a raw sequence or upload a FASTA file. The tool parses it in the browser, strips FASTA headers and whitespace, and checks the length and residue alphabet so you know it is valid before spending anything.

When you run a fold, the sequence is sent to our self-hosted ESMFold2-Fast weights, screened for biosafety, and returned as an mmCIF structure with pTM and pLDDT confidence you can inspect in the same 3D viewer shown here.

What you get

A downloadable predicted structure, per-structure confidence metrics, and an interactive viewer — without installing PyTorch, provisioning a GPU, or cloning the repository.

Prefer to run it yourself? Generate browser-local starter code with the ESMFold2 code generator, or wire it into your own pipeline via the ESMFold2 API.

Hosted beta limits

  • Single protein chain, 16–700 amino acids.
  • Standard one-letter amino acid codes only.
  • 12 credits (≤400 aa) or 28 credits (401–700 aa).
  • Failed runs are refunded automatically.
  • No regulated, pathogen, toxin, or confidential sequences.

Check measured speed and accuracy in the ESMFold2 benchmark.

FAQ

Can I run ESMFold2 online for free?

Validating a sequence and exploring the interactive example structure are free in the browser. Running a hosted ESMFold2 fold on your own sequence needs a free account and usage-based credits, because each run uses real GPU time and biosafety screening.

What sequences can ESMFold2 fold here?

Single protein chains of 16 to 700 standard amino acids (codes ACDEFGHIKLMNPQRSTVWY). Multi-chain complexes, RNA/DNA, ligands, and MSA workflows are not part of this hosted beta.

Is my protein sequence stored?

No. Sequence validation runs entirely in your browser. When you submit a hosted run, the sequence is processed transiently to fold the structure and is not retained as a stored sequence afterwards.

How accurate is ESMFold2 online?

Each result reports per-structure pTM and pLDDT confidence. See the ESMFold2 benchmark for measured runtime and confidence across sequence lengths before relying on a prediction.

Written by ESMFold2 Tools Editorial Team

Fact-checked against Biohub official docs, GitHub examples, and linked primary sources.

Last updated June 7, 2026

Official sources

Biohub model pageGitHub repositoryOfficial Colab